From only my experience which is almost all anecdotal:
-Large doses of SO2 are very hard for me to justify. I am extremely sensitive to sulphur in wine (so, for example, J. J. Prum and I don't play well together). And while it is true that aging or exposure to oxygen can make a difference, I wonder just how altered the wine is even with such exposure.
-I am afraid of stopping ML and not sterile filtering. I know people who don't and have good luck but an entire batch being spoiled by refermentation in bottle is something that would keep me up at night.
-I noticed in the article that the author lumped all filtration techniques under the heading of bad. Of course, he was speaking of Beaujolais only and I have nothing to dispute that specific claim. But I don't feel that all types of filtration (or fining, for that matter) are "bad" for other varieties. It's a case by case basis and I have used it when I felt it appropriate. Hell, I had one wine go into a cross-flow unit and come out better, on both the nose and palate.
-In every taste test that I have done where the same wine, filtered and unfiltered, was tasted a year or more after bottling, I have seen little difference or preferred the filtered version. (Although, I never tasted Beaujolais that way.)
None of this is intended to endorse filtering or SO2 (or any other product) in all cases. But neither do I see a major problem with their use.
As to whether this is manipulative or natural, I will leave to the individual to decide. I have little idea what those terms mean.
Best, Jim